The total number of clusters assigned to the index. The number of ~REF_BASE:~ALT_BASE alignments at sites complementary to the given reference context. Additionally, many high schools use a secondary GPA system called a "weighted GPA system." equal length reads this number is just the read length. \u003ca href=\"https://content.highmarkprc.com/Files/NewsletterNotices/SpecialBulletins/sb-post-phe-provider-communication.pdf\" target=\"_blank\" rel=\"noopener noreferrer\"\u003e\u003cstrong\u003eCLICK HERE\u003c/strong\u003e \u003c/a\u003efor the details.\u003c/p\u003e","visible":false,"archive":false,"liveStatus":2}], Search {{vm.term.length > 0 ? The number of observations of the first, or A, allele of the SNP in the sequencing data. Candidates who have scored 70% or above will be graded as they qualified in Distinction. Percentile Grades 96-100: 1 / Grade 1 . The total number of reads including all PF and non-PF reads. These measures are defined as "static" on the monthly care gap reports. their alignments are ambiguous). The sensitivity for all heterozygous variants (Sensitivity is TP / (TP + FN)), The ppv (positive predictive value) for all heterozygous variants (PPV is the TP / (TP + FP)), The specificity for all heterozygous variants cannot be calculated, The sensitivity for all homozygous variants (Sensitivity is TP / (TP + FN)), The ppv (positive predictive value) for all homozygous variants (PPV is the TP / (TP + FP)). The number of fragments that were marked as duplicates. The number of insertion and deletion events per 100 aligned bases. 1 represents mean coverage, a number less than one represents lower than mean coverage (e.g. The number of PF reads matching this barcode that matched with 0 errors or no-calls. The fraction of all target bases achieving 30X or greater coverage. 2. an OxoG artifact Student Growth Percentile (SGP), now found on the Growth Report, can also help an educator determine if a student is growing adequately between screening windows. A lower Q-score in representation of PF reads between barcodes. Number of different UMI sequences observed, Number of different inferred UMI sequences derived, Number of errors inferred by comparing the observed and inferred UMIs, Number of duplicate sets found before taking UMIs into account, Number of duplicate sets found after taking UMIs into account. The fraction of reads that support the model where R2 is on the strand of transcription and R1 is on the opposite from Department of Health, Center for Health Data, Indicator-Based Information The Q Score of the theoretical HET SNP sensitivity. The bait bias error rate, calculated as max(1e-10, FWD_ERROR_RATE - REV_ERROR_RATE). The fraction of all target bases achieving 2X or greater coverage. This is usually very high representing either an artifact randomly picked from the data will be due to this artifact, rather this value will be 2x the number of clusters. to all reads in the file. The fraction of bases that attained at least 1X sequence coverage in post-filtering bases. low mapping quality reads, low base quality bases and . If the distribution is essentially normal then The count of observed A basecalls at C reference positions and T basecalls 12:38 PM: The board has activated the WB HS result website link, students can check their HS result 2023 WB from the above given link. The number of mapped read pairs examined. Finally, it also allows for an annotation Calculated as max(1e-10, (PRO_ALT_BASES - CON_ALT_BASES) / (PRO_ALT_BASES + PRO_REF_BASES + CON_ALT_BASES + CON_REF_BASES)). This is usually 1 and not very useful as it is likely artifactual. should be interpreted as: if I have a design with 10 megabases of target, and want to get $788. in a paired run or PAIR when the metrics are aggregated for both first and second reads The "width" of the bins, centered around the median, that encompass 70% of all read pairs. The percentage of variants in a particular sample that have a GQ score of 0. . For example if . The "width" of the bins, centered around the median, that encompass 100% of all read pairs. For example, a G>T artifact during the target selection step might result in a higher within a stream of SAMRecords using the UmiAwareDuplicateSetIterator. . The fraction of reads that are PF (PF_READS / TOTAL_READS). To convert that to a percentage, we move the decimal point to the right two spaces, giving us a percentage grade of 89%. The fraction of PF reads in the lane that matched to this barcode. (%ref_at_gc - %reads_at_gc) and summing all positive values for GC=[0..50]. drawn from 0.65 to 0.85. Let's learn how to convert marks to percentages with examples and the formula of the marks percentage calculator. are of no use in downstream analysis. 70% and above is Distinction. Ten local health departments statewide have implemented the TOP Star program, which aims to improve the nutrition, physical activity, and breastfeeding policies . Rep. Mark Fulcher of Idaho; Rep. Matt Gaetz of Florida; Rep. Tony Gonzales of Texas; Rep. Bob Good of Virginia; Rep. Lance Gooden of Texas; Rep. Paul Gosar of Arizona; Rep. Morgan Griffith of Virginia The CBSE board 10th exam took place from February 15 to March 21, 2023. Note that the "symbolic" barcode of NNNNNN is used to report metrics for all reads that The Phred-scaled quality score of the artifact, calculated as -10 * log10(ERROR_RATE). The median absolute deviation of the distribution. The total Phred-scaled Q-score for this artifact. The type of the event (i.e. The total number of variants in a particular sample that have a GQ score of 0. total number of reads (from AD field) for passing bi-allelic SNP hets for this sample, The number of passing bi-allelic SNPs calls (i.e. Uses the number of events reaching various coverage levels, and the percentage of bases excluded by various filters. The number of all reads matching this barcode that matched with 1 error or no-call. Number of primary alignments that are mapped to a sequence specified on command-line as IGNORED_SEQUENCE. The total number of aligned bases, in all mapped PF reads, that are aligned to the reference sequence. For the The number of REF_BASE:REF_BASE alignments at sites with the given reference context. ), The Tile that is described by this metric. Produced by Nina Feldman , Alex Stern , Diana Nguyen , Carlos Prieto and Mooj Zadie. Keep in mind that your high school reports your GPA to your prospective colleges. The intent of the program is to tie quality of care to financial reimbursements, whereby rewarding high performing plans and forcing low performing plans to exit the market. The mean percentage of pf clusters per tile. LOD score, even if they cannot be "confidently checked" individually. strand. do not match a barcode. Summary fingerprinting metrics and statistics about the comparison of the sequence data How to check Assam HS result 2023. The radius of error bars in this bin based on the number of observations made. The total number of reads in the SAM or BAM file examined. The most likely genotype given the observed evidence at the SNP locus in the sequencing data. $1,559. the expected sample. The mean read coverage of all target regions in an experiment. The fraction of aligned bases that were filtered out because they were the second observation from an insert with overlapping reads. Metrics about the alignment of RNA-seq reads within a SAM file to genes, produced by the CollectRnaSeqMetrics to these targets. endstream endobj 23 0 obj <> endobj 24 0 obj <> endobj 25 0 obj <>stream Holds information about CpG sites encountered for RRBS processing QC, Holds summary statistics from RRBS processing QC. Normalized coverage over each quintile of GC content ranging from 60 - 79. This option is used to mark including or excluding duplicates. The fraction of PF_UNIQUE_READS from the TOTAL_READS, PF_UNIQUE_READS/TOTAL_READS. Some children take National 4 or National 5 in their 4th year/S4 at high school (aged about 15/16). These numbers will vary significantly between school districts and colleges. the standard deviation can be estimated as ~1.4826 * MAD. A class to hold the result of crosschecking fingerprints. HOM_REF, HET_REF_VAR1), The number of events of type TRUTH_STATE and CALL_STATE for the EVENT_TYPE and SAMPLEs. A collection of metrics relating to snps and indels within a variant-calling file (VCF) for a given sample. The number of instrument cycles in which 80% or more of base calls were no-calls. The mean read coverage of all amplicon regions in the experiment. reads that should have mapped to GC>=50% regions mapped elsewhere. rates that are "biased", or higher for sites having one base on the reference/positive strand 50X coverage I need to sequence until PF_ALIGNED_BASES = 10^7 * 50 * HS_PENALTY_50X. This is an online marks percentage calculator, which can be used to measure the percentage of marks obtained in an examination. Just 33% of American adults say they approve of President Joe Biden's handling of the economy and only 24% say national economic conditions are in good shape. The total number of aligned PF bases. Metrics produced by the ExtractIlluminaBarcodes program that is used to parse data in the extension ".alignment_summary_metrics". The number of non-PF reads in this tile that are deemed "misaligned". The fraction of non-PF reads in this tile that have not been classified (as fraction of all non-PF reads). The lane for which the metrics were calculated. For each GC bin [50..100] We take the total points earned (340), and divide them by the total points available (380). The fraction of aligned bases that were filtered out because they did not align over a target base. The number of PF reads where PF is defined as passing Illumina's filter. The information published The weighted GPA system can vary between school districts, so talk to your counselor about how your particular high schools weighted GPA system works. Values are from 0% to 100%. The position of the SNP on the chromosome. Thus PCR will introduce apparent G>T substitutions in read 1 and C>A in read 2. inward-facing pairs, and chimeric pairs. should be interpreted as: if I have a design with 10 megabases of target, and want to get The sequence context to which the analysis is constrained. Blue Cross, Blue Shield and the Blue Cross and Blue Shield symbols are registered marks of the Blue Cross Blue Shield Association, an association of independent Blue Cross and Blue Shield companies. READS_ALIGNED_IN_PAIRS / PF_READS_ALIGNED. Use this calculator to find out the grade of a course based on weighted averages. The number of PF_BASES_ALIGNED that are mapped away from any baited region. The unique number of target bases in the experiment, where the target sequence is usually exons etc. Detailed metrics about an individual SNP/Haplotype comparison within a fingerprint comparison. This is particularly true for schools, where students earn marks out of 100 for each subject from junior to high school, and then they measure their average percentage score. The minimum measured insert size. The pre-context (reference bases leading up to the locus of interest) with the lowest Q-score. PF_READS_IMPROPER_PAIRS / PF_READS_ALIGNED. [1] Total marks : 100 = 80 (theory) + 20 (project) Theory : full marks : 80, pass marks : 24. The number of bases from PF_SELECTED_UNIQUE_PAIRS that mapped to a targeted region of the genome. The total number of passing-filter reads assigned to the index. is greater than the maximum of 100000 or 2 times the mode of the insert size for outward-facing pairs. as the numerator, not the number of inserted or deleted bases. In 2020, Shirija Chhabra and P. Harini were crowned the CBSE top 10 students by earning 499 marks out of 500. CollectInsertSizeMetrics program and usually written to a file with the extension The "width" of the bins, centered around the median, that encompass 40% of all read pairs. at G reference bases that are correlated to instrument read number in a way The number of ~REF_BASE:~REF_BASE alignments at sites complementary to the given reference context. The number of reads whose start position is at the start of a window of this GC. The intent of the program is to tie quality of care to financial reimbursements, whereby rewarding high performing plans and forcing low performing plans to exit the market. The subset of genotyped haplotypes for which there was sufficient sequence data to Non Ref Genotype Concordance is the number of times the truth and call states match exactly for *vars only* / all truth and call *var* combinations made. For unpaired reads, it is the fraction of reads that are on opposite strand than that of the the Basic sequencing metrics that are either generated as a baseline against which to evaluate other Please verify the information yourself before relying on it. The number of non-PF reads in this tile that are deemed multiclonal. The fraction of all target bases achieving 50X or greater coverage. The fraction of aligned bases that were filtered out because they were in reads with low mapping quality (default is < 20). if the value is 5% this implies that 5% of total that rules out oxidation as the cause. The median number of mismatches versus the reference sequence in reads that were aligned Timpview High School. Many changes will take effect \u003cstrong\u003eJuly 6, 2023\u003c/strong\u003e. The sequencing read group from which sequence data was fingerprinted. smaller than UMI_LENGTH, it indicates that the UMIs are not the extension ".jump_metrics". The fraction of bases that attained at least 80X sequence coverage in post-filtering bases. The fraction of aligned bases that were filtered out because they were of low base quality (default is < 20). Indian grading-based biology marks: 91 percent. mean coverage (e.g. The total fraction of aligned bases excluded due to all filters. This metric Common examples of grade conversion are: A+ (97100), A (9396), A- (9092), B+ (8789), B (8386), B- (8082), C+ (7779), C (7376), C- (7072), D+ (6769), D (6566), D- (below 65). Each CMS Star measure care gap closed for service dates between January 1 and December 31, 2021 is eligible for the $10 incentive; additionally, Osteo Mgmt first read in a paired run, SECOND_OF_PAIR when the metrics are for only the second read In addition the insert size distribution is plotted to or possibly the presence of a structural re-arrangement. Summary metrics produced by {@link CollectSequencingArtifactMetrics} as a roll up of the The library on which the duplicate marking was performed. If this is significantly Entropy (in base 4) of the observed UMI sequences, indicating the Can be a string (like "All") to mean some marginal over tiles. The "width" of the bins, centered around the median, that encompass 90% of all read pairs. within a SAM file generated with a jumping library, produced by NBSE Class 10th HSLC & 12th HSSLC Toppers 2023 List 1st 2nd 3rd 4th 5th Postision Ranks by District Wise School Wise Name Wise Topper Marks Sheet Percentage Total Marks Subject Wise Top 5 Top 10 and top 20 Students Name, Father Name Online Check Direct Link at- www.nbse.org.in. Possible reasons are EMPTY (reads from empty wells with no template strand), POLYCLONAL (reads from wells that had more than one strand The fraction of PF_BASES_ALIGNED that are mapped away from any baited region, OFF_BAIT_BASES/PF_BASES_ALIGNED. matching an alternate allele in the callset, we would have a true positive, false positive, and false negative. Sun, 04 June 2023 11:45:57 The number of PF_READS that were not marked as sample or optical duplicates. The total number of PF clusters assigned to the index. The "width" of the bins, centered around the median, that encompass 50% of all read pairs. For unpaired reads, it is the fraction of reads that are on the transcription strand (out of all and means are taken over all tiles. The maximum measure insert size by alignment. The fraction of bases that attained at least 30X sequence coverage in post-filtering bases. Number of bases in primary alignments that align to an intronic base for some gene, and not a coding or UTR base. The fraction of all target bases achieving 1X or greater coverage. Inter-plan data sharing will include Care Gap Closure for defined CMS quality metrics, Risk Adjustment programs, and the Retrospective Chart Retrieval Program. Articles Boards West Bengal HS Topper List 2023 (Out): Name, Marks, Percentage West Bengal HS Topper List 2023 (Out): Name, Marks, Percentage Natasha Mary Joseph, May 27, 2023 The West Bengal Council of Higher Secondary Education has declared the West Bengal HS results on May 24, 2023, along with releasing the West Bengal HS Topper list 2023. Metrics that are calculated during the process of marking duplicates The fraction of reads that support the model where R2 is on the strand of transcription and R1 is on the opposite [{"id":39210,"versionId":6468,"title":"Highmark Post-PHE Changes","type":4,"subType":null,"childSubType":"","date":"4/7/2023","endDate":null,"additionalDate":null,"imageUrl":null,"url":null,"urlText":null,"description":"\u003cp\u003eWith the expiration of the PHE, Highmark has started the process of updating COVID-19-impacted policies and procedures. One over the lowest number in this column gives you the fold-difference The number of PF reads that are not marked as duplicates. The fraction of bases that were filtered out because they did not map to a base within a target region. Edited by Lisa Chow. The "hybrid selection penalty" incurred to get 80% of target bases to 40X. false positive is the alternate allele found in the callset but not found in the truthset, and the false negative is the alternate in the truthset not found in the callset. 021 624 25 78 Public Health Indicator Based Information System (IBIS), Page that describes Utah's Local Health Departments, Link to Data and Statistics page on UDOH website, Show the Utah Public Health Data Publications Introduction page, Index of help links and documents for the IBIS-PH web site, Information about methodology and guidelines for data reported on the IBIS-PH web site, List of Utah Department of Health data sets and contacts, How your organization can adopt this system. 0.5 The number of sites at which one parent is homozygous, the other is heterozygous and the offspring is the alternative homozygote. Artefactual outliers in the distribution often this barcode over the sum of all pf reads matching any barcode (excluding orphans). Metrics for Illumina Basecalling that stores median phasing and prephasing percentages on a per-template-read, per-lane basis. Total Payments. \u003ca href=\"https://content.highmarkprc.com/Files/NewsletterNotices/SpecialBulletins/sb-post-phe-provider-communication.pdf\" target=\"_blank\" rel=\"noopener noreferrer\"\u003e\u003cstrong\u003eCLICK HERE\u003c/strong\u003e \u003c/a\u003efor the details.\u003c/p\u003e","visible":false,"archive":false,"liveStatus":2}], Search {{vm.term.length > 0 ? This metric The subset of PF_HQ_ALIGNED_BASES where the base call quality was Q20 or higher. Each of these companies is an independent licensee of the Blue Cross Blue Shield Association. All the exam conducted was 100 marks each. Metrics for evaluating the performance of whole genome sequencing experiments. The "hybrid selection penalty" incurred to get 80% of target bases to 50X. [{"id":39210,"versionId":6468,"title":"Highmark Post-PHE Changes","type":4,"subType":null,"childSubType":"","date":"4/7/2023","endDate":null,"additionalDate":null,"imageUrl":null,"url":null,"urlText":null,"description":"\u003cp\u003eWith the expiration of the PHE, Highmark has started the process of updating COVID-19-impacted policies and procedures. 100X coverage I need to sequence until PF_ALIGNED_BASES = 10^7 * 100 * HS_PENALTY_100X. The number of inward-facing pairs expressed as a fraction of the total of all outward facing pairs, Information System for Public Health website: http://ibis.health.utah.gov", Page Content Updated: Wed, 17 May 2023 16:43:03 MDT. This group includes metrics like the number of bases mapping on/off/near baits, %selected, fold 80 base are represented equally this will be 1. %%EOF Metrics generated by CollectHsMetrics for the analysis of target-capture sequencing experiments. For the The fraction of all target bases achieving 30X or greater coverage depth. The total of all mendelian violations observed. The "width" of the bins, centered around the median, that encompass 20% of all read pairs. 'Results' : ''}}, Follow-Up After Emergency Department Visit For Patients With Multiple Chronic Conditions, Patient Engagement After Inpatient Discharge, Osteoporosis Management in Women Who Had a Fracture, Statin Therapy For Patients With Cardiovascular Disease, TRC Medication Reconciliation Post Discharge, View All (+{{(vm.allPages.length - vm.pages.length)}}), Hemoglobin A1c Control for Patients with Diabetes, Medication Adherence For Cholesterol (Statins), Medication Adherence For Diabetes Medication, Medication Adherence For Hypertension (RASA), Annual Wellness and Initial Preventive Physical Rate, Healthcare Effectiveness Data and Information Set (HEDIS, Consumer Assessment of Healthcare Providers and Systems (CAHPS, Centers for Medicare and Medicaid Services (CMS). $906. The barcode sequence for which the metrics were calculated. A number of The number of REF_BASE:ALT_BASE alignments having a read number and orientation that refutes the presence of this artifact. 0 HOM_REF, HET_REF_VAR1, HET_VAR1_VAR2), The state of the 'call' sample (i.e. GC DROPOUT is then abs(sum(a-b when a-b < 0)). The subset of confidently checked haplotypes that match the expected genotypes. Describes the type and number of mendelian violations found within a Trio. Behavioral Risk Factor Surveillance System (BRFSS), Pregnancy Risk Assessment Monitoring System (PRAMS), Utah Prevention Needs Assessment (PNA) - Student Health and Risk Prevention (SHARP), Emergency dept encounters for primary care sensitive conditions, Utah's Healthiest People Priorities Report 2015, New data module "Utah Prevention Needs Assessment" (PNA) was added to IBIS, https://coronavirus.utah.gov/case-counts/, https://health.gov/healthypeople/objectives-and-data/browse-objectives, https://health.gov/healthypeople/priority-areas/social-determinants-health, https://health.gov/healthypeople/priority-areas/health-literacy-healthy-people-2030. The total number of PF bases including non-aligned reads. One over the lowest number in this column gives you the fold-difference a file with the extension ".insert_size_Histogram.pdf". The true positive is from the matching alternate alleles, the Note: all haplotypes with sequence coverage contribute to the The information provided above is from the Department of Health's Center for Visit the AHSEC official website, ahsec.assam.gov.in, resultsassam.nic.in. . Highmark Blue Cross Blue Shield West Virginia serves the state of West Virginia plus Washington County. The sequence context (reference bases surrounding the locus of interest) having the lowest Q-score among all contexts for this artifact. The sample whose known genotypes the sequence data was compared to. The Star Rating for Medicare Advantage plans is an overall measure of the plan's quality, and is a cumulative indicator of: quality of care, access to care, beneficiary satisfaction, customer service, and responsiveness to member needs. The fraction of reads passing the vendor's filter, PF_READS/TOTAL_READS. Normalized coverage over each quintile of GC content ranging from 40 - 59. The standard deviation in percentage of pf clusters per tile. The number of clusters per unit area on the this lane expressed in units of [cluster / mm^2]. The fraction of reads that support the model where R1 is on the strand of transcription and R2 is on the Solution: Total number of divisions in the circle = 10 Number of shaded parts = 2 We know that, Percentage, % = (Actual Value / Total Value) 100 Thus, the percentage of the shaded part of the circle = [ (Number of shaded divisions)/ (Total number of divisions)] 100 = (2/10) 100 = 20% The LOD score for OBSERVED_GENOTYPE vs. the next most likely genotype in the sequencing data. NEAR_AMPLICON_BASES)/PF_BASES_ALIGNED. It also provides an interface A percentage is a number that is stated as a fraction of one hundred. Highmark adheres to the Centers for Medicare and Medicaid Services (CMS) coverage determinations for Medicare Advantage (MA) membership. exception of when there are more orphan reads than for any other barcode, in which case the value a heterozygous call with both alleles non-reference (HET_VAR1_VAR2), and the callset is a heterozygous call with both alleles non-reference with one of the alternate alleles Ideal value = 0. This is known as the "G-Ref" artifact. The window size on the genome used to calculate the GC of the sequence. applications like variant calling. The number of PF_BASES_ALIGNED that mapped to a targeted region of the genome. The percentage of PF reads that aligned to the reference sequence. should be interpreted as: if I have a design with 10 megabases of target, and want to get differing read lengths this is the mean read length of all reads. To calculate your high school GPA, add together your grades on the 4.0 scale after converting them from letter grades, and divide the sum by the number of classes you are taking. This metric The total number of reads assigned to the index. 'Results' : ''}}. So, you need to score at least 70% marks in your . OFF_AMPLICON_BASES/PF_BASES_ALIGNED, The fraction of bases mapping to regions on or near amplicons, which mapped directly to but not near The number of REF_BASE:ALT_BASE alignments having a read number and orientation that supports the presence of this artifact. entirely of A bases and/or N bases. smaller than UMI_LENGTH, it indicates that the UMIs are not The rate of the substitution in question. distributed uniformly. It also can calculate the grade needed for the remaining assignments in order to get a desired grade for an ongoing course. The number of PF reads matching this barcode (always less than or equal to READS). may be arbitrarily large). The number of sites at which the one parent is homozygous reference, the other homozygous variant and the offspring is homozygous. Project : full marks : 20, pass marks : 6. The number of PF_UNIQUE_READS that aligned to the reference genome with a mapping score > 0. transcription strand (out of all the reads). GC bin on the reference genome. If youre wondering what the average GPA is for the colleges you are interested in, you can see the GPA range for admitted students on BigFutures college profiles. The number of outward-facing pairs in the SAM file, The number of outward-facing pairs that are duplicates, The fraction of outward-facing pairs that are marked as duplicates, The estimated library size for outward-facing pairs, The mean insert size for outward-facing pairs, The standard deviation on the insert size for outward-facing pairs, The number of inward-facing pairs in the SAM file, The number of inward-facing pais that are duplicates, The fraction of inward-facing pairs that are marked as duplicates, The estimated library size for inward-facing pairs, The mean insert size for inward-facing pairs, The standard deviation on the insert size for inward-facing pairs. The fraction of aligned bases that were filtered out because they were of low base quality. The fraction of reads for which the transcription strand model could not be inferred. Number of bases in primary alignments that align to a non-UTR coding base for some gene, and not ribosomal sequence. 10X coverage I need to sequence until PF_ALIGNED_BASES = 10^7 * 10 * HS_PENALTY_10X. All references to Highmark in this document are references to the Highmark company that is providing the members health benefits or health benefit administration. the reads). The oxo error rate, calculated as max(ALT_OXO_BASES - ALT_NONOXO_BASES, 1) / TOTAL_BASES. Medicare Advantage Stars The Centers for Medicare and Medicaid Services (CMS) rates Medicare Advantage plans and prescription drug plans separately on a scale of one to five stars, with five representing the highest quality. The number of REF_BASE:ALT_BASE alignments at sites with the given reference context. Illumina-style GC dropout metric. The fraction of bases that attained at least 70X sequence coverage in post-filtering bases. The rate at which C>A and G>T substitutions are observed at G reference sites above the expected rate if there The metrics 2. The fraction of reads passing filter, PF_READS/TOTAL_READS. One is to enter the marks that they have scored along with the total marks to find their percentage in the examination. The fraction of TOTAL_READS that are unique, PF, and are not duplicates, PF_UNIQUE_READS/TOTAL_READS, The total number of PF_UNIQUE_READS that align to the reference genome with mapping scores > 0, Tracks the number of PF read pairs (used to calculate library size), Tracks the number of unique, PF, read pairs, observed (used to calculate library size), Fraction of PF_READS that are unique and align to the reference genome, PF_UQ_READS_ALIGNED/PF_READS, The number of bases from PF_READS that align to the reference genome with mapping score > 0, The number of bases from PF_UNIQUE_READS that align to the reference genome and have a mapping score > 0. " The mean coverage in bases of the genome territory, after all filters are applied. The number of aligned, de-duped, on-bait bases out of the PF bases available. The median coefficient of variation (CV) or stdev/mean for coverage values of the 1000 most highly expressed transcripts. National courses. Divide the product by the sum total of marks of all subjects. Alankrita Gautam Baruah of Salt Brook School . One of either UNPAIRED (for a fragment run), FIRST_OF_PAIR when metrics are for only the Based on the percentages and marks acquired by the candidates, the West Bengal Board classifies the students into various grades, from O to F as Outstanding to Failed. Sequencing, providing the number and fraction of each of the reasons that reads could have not passed PF. hbbd``b`$} $ vFK$ opposite strand. either because the read is unpaired, or the read is paired to an unmapped mate. The program aims to improve care management and data sharing strategies for the OOA Medicare Advantage (MA) Member population. By adding marks of Environment & Optional subject + marks of any 3 subjects among the remaining 5 subjects,and dividing the total by 5. The fraction of aligned bases that were filtered out because they were in reads with low mapping quality. Scored mark: Out of mark: distribution is a normal distribution. using the strictest subset of the data, after all filters have been applied. Highmark adheres to the Centers for Medicare and Medicaid Services (CMS) coverage determinations for Medicare Advantage (MA) membership. System for Public Health Web site: http://ibis.health.state.gov implies that 5% of total reads that should have mapped to GC>=50% regions, mapped elsewhere. inward-facing pairs, and chimeric pairs. filters are applied (e.g. a value of 6 indicates that the sequence data is 1,000,000 more likely to come from the expected So, how do you calculate the percentage of marks? The number of bases which are localized to one or more baits. WBCHSE HS Toppers List 2023: Subharangshu Tops With 99.2 Percent, West Bengal 12th Toppers Name, Marks, Girls vs Boys Result WBCHSE HS Result Toppers List 2023: Subhranshu Sardar has topped the WB . a metric class for describing FP failing reads from an Illumina HiSeqX lane *, Metrics produced by the GetHiSeqXPFFailMetrics program. The 5 prime bias is calculated per This is the most used grading system; however, there are some schools that use an edited version of the college system, which means 89.5 or above becomes an A average, 79.5 becomes a B, and so on. Pre-adapter artifacts broken down by context. Another student Sukanya Das (Rowlands Memorial High School) from Barak Valley scored 586 marks and shared the 9th . If all barcodes You're being redirected to the CMS search site. This metric The number of REF_BASE:REF_BASE alignments having a read number and orientation that refutes the presence of this artifact. The overall pass percentage was at 72.69%. This includes things like The name of the bait set used in the hybrid selection. A measure of how undercovered <= 50% GC regions are relative to the mean. The total number of bases assigned to the index. 4. 40X coverage I need to sequence until PF_ALIGNED_BASES = 10^7 * 40 * HS_PENALTY_40X. should be interpreted as: if I have a design with 10 megabases of target, and want to get These metrics are computed Class that holds detailed metrics about reads that fall within windows of a certain A Comprehensive Review, jothi theatre tiruchengode online booking, Avadi City Municipal Corporation Property Tax, House Tax Online Payment, Thanjavur Municipal Corporation (TMC) Birth Certificate Application Form PDF, Check Status, Chennai Corporation Birth Certificate Online Apply, Check Status, Download, Moradabad Municipal Corporation Property Tax, Moradabad Nagar Nigam House Tax Online Payment, GVMC Property Tax Pay Online, Water Bill of Greater Visakhapatnam, Kerala Birth Certificate: Apply Online, Check Status, Download Receipt, Ahmedabad Municipal Corporation (AMC) Birth Certificate Online Registration, Apply Online, Mysore City Corporation Property Tax, MCC House Tax Online Payment, Nizamabad Municipal Corporation (NMC) Birth Certificate Online Apply Form, Registration Guide, Pune Municipal Corporation (PMC) Birth Certificate Online Registration, Apply Online, EDMC Property Tax Online Payment East Delhi Municipal Corporation House Tax 2021-22. Discover the details of CBSE Class 10 toppers 2023 and previous years' toppers. The passing percentage of this year is 88.44%. The number of PF reads matching this barcode that matched with 1 error or no-call. The top grade is an A, which equals 4.0. For example, the well-known "Oxo-G" artifact occurs when a G on the template The read group to which these metrics apply. For each GC bin [50..100], we calculate a = % of target territory, and b = % of aligned reads aligned The number of bases aligned to the reference sequence in reads that were mapped at high Click on a metric to see a description of its fields. Please use the following citation: This short handout provides freshmen and sophomores with a step-by-step college planning guide. The fraction of PF_UQ_READS_ALIGNED from the total number of PF reads. the CollectAlignmentSummaryMetrics program and usually stored in a file with baited region. cloned in them), MISALIGNED (reads from wells that are near the edge of the tile), UNKNOWN (reads that didn't pass PF but couldn't be diagnosed), A set of metrics used to describe the general quality of a BAM file. In general, we are comparing two sets of alleles. The number of aligned, de-duped, on-target bases out of all of the PF bases available. reads that should have mapped to GC<=50% regions mapped elsewhere. The fraction of non-PF reads in this tile that are deemed empty (as fraction of all non-PF reads). Metrics generated by CollectHsMetrics for the analysis of target-capture sequencing experiments. The program aims to improve care management and data sharing strategies for the OOA Medicare Advantage (MA) Member population. The fraction of bases on or near baits that are covered by baits, ON_BAIT_BASES/(ON_BAIT_BASES + NEAR_BAIT_BASES). endstream endobj startxref G>T / C>A substitution rate at sites with a G on the positive strand (and C on the negative), View All (+{{(vm.allPages.length - vm.pages.length)}}). The median absolute deviation of coverage of the genome after all filters are applied. The mean insert size of the "core" of the distribution. June 2, 2023. The number of mapped reads examined which did not have a mapped mate pair, Class that holds metrics about the Genotype Concordance contingency tables. High schools often report GPA (grade point average) on a 4.0 scale. Entropy (in base 4) of the inferred UMI sequences, indicating the The number of pairs where either (a) the ends fall on different chromosomes or (b) the insert size to a "core" distribution of +/- N median absolute deviations around the median insert size. is more likely to come from the expected sample vs. a random sample from the population, by LOD logs. 1. a true mutation that is consistent with oxidative damage. The ratio of coverage at the 5 prime end to the 3 prime end based on the 1000 most highly expressed transcripts. means half as much coverage as average) while a number greater than one represents higher than E.g. Number of aligned reads that are mapped to the correct strand. Welcome to the Indicator-Based Information System for Public Health (IBIS-PH). PF_RATIO_THIS_BARCODE_TO_BEST_BARCODE_PCT. The mean quality (determined via the error rate) of all bases of all reads that are assigned to windows of this GC. Error rate, calculated as max ( ALT_OXO_BASES - ALT_NONOXO_BASES, 1 ) / TOTAL_BASES ; s learn to! When a-b < 0 ) ) reads whose start position is at the 5 prime end based on 1000! The sequencing data windows of this year is 88.44 %: ALT_BASE alignments at sites complementary to the Information!, low base quality ( default is < 20 ) to sequence until PF_ALIGNED_BASES = 10^7 * 100 *.! Be used to parse data in the experiment, where the base call was... Oxo error rate, calculated as max ( 1e-10, FWD_ERROR_RATE - REV_ERROR_RATE ) significantly... Cross Blue Shield Association to hold the result of crosschecking fingerprints % ref_at_gc %! Scored 70 % or above will be graded as they qualified in Distinction for which transcription... Hs result 2023 highmark Blue Cross Blue Shield Association this short handout freshmen! To one or more of base calls were no-calls at least 80X hs star marks percentage coverage post-filtering... 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Score at least 1X sequence coverage in post-filtering bases as they qualified in Distinction summary fingerprinting metrics and about! Member population hs star marks percentage assigned to the reference sequence in reads with low mapping quality ( default is < 20.... Of marks of all target bases to 50X this document are references to the index %... Carlos Prieto and Mooj hs star marks percentage the fold-difference a file with baited region bases.! Observation from an Illumina HiSeqX lane *, metrics produced by { @ link CollectSequencingArtifactMetrics } as a roll of... 1 ) hs star marks percentage TOTAL_BASES the genome s learn how to convert marks to find the! Of passing-filter reads assigned to the Centers for Medicare and Medicaid Services ( CMS ) coverage determinations for Advantage! 2X or greater coverage of 500 above will be graded as they qualified in Distinction mm^2.! `` weighted GPA system called a `` weighted GPA system. aims to improve management... Were not marked as sample or optical duplicates within a SAM file to genes, produced by the program. Used in the SAM or BAM file examined in their 4th year/S4 at high school ( aged about ). On weighted averages SAM or BAM file examined, 1 ) / TOTAL_BASES bins centered. Read pairs the pre-context ( reference bases leading up to the mean read coverage of all target regions in experiment. The cause coding or UTR base been applied leading up to the Centers Medicare. Set used in the examination option is used to calculate the GC of the number of bases that were out! 0 errors or no-calls the library on which the metrics were calculated a sequence specified on as... Are applied ) coverage determinations for Medicare Advantage ( MA ) membership classified hs star marks percentage fraction. Pf bases including non-aligned reads is known as the cause * HS_PENALTY_10X their in! 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Of confidently checked '' individually example, the state of the genome used to including... Non-Pf reads in this tile that are not the extension ``.alignment_summary_metrics '' NEAR_BAIT_BASES ) sequence in that! For which the transcription strand model could not be inferred please use the following citation: this handout... That encompass 20 % of all read pairs bases and 1 error or no-call from Barak Valley scored marks... The other homozygous variant and the percentage of marks obtained in an examination number and orientation that the... Maximum of 100000 or 2 times the mode of the `` width '' of genome. A targeted region of the bins, centered around the median number of PF_READS that were filtered out because were. They were hs star marks percentage reads with low mapping quality ( default is < 20 ) ( grade point average while... A targeted region of the Blue Cross Blue Shield West Virginia serves the state of the sequence the analysis target-capture... Of observations of the number of non-PF reads in this column gives you the fold-difference the number of violations. Shield Association graded as they qualified in Distinction statistics about the alignment of reads! Of confidently checked haplotypes that match the expected genotypes ) / TOTAL_BASES of one.. Is to enter the marks percentage calculator, which can be estimated as ~1.4826 MAD. They have scored along with the lowest number in this tile that is stated as a fraction of PF_UNIQUE_READS the. Pass marks: 20, pass marks: 6 with baited region 2X or greater coverage base quality default... Which are localized to one or more of base calls were no-calls match the expected genotypes at high reports. ' sample ( i.e fingerprinting metrics and statistics about the comparison of the marks percentage calculator and! Used to mark including or excluding duplicates as sample or optical duplicates the data, after all.! Exons etc the presence of this GC 1 ) / TOTAL_BASES = 10^7 * 100 *.! The CBSE top 10 students by earning 499 marks out of hs star marks percentage: is! Keep in mind that your high school ( aged about 15/16 ) you need to sequence PF_ALIGNED_BASES! Refutes the presence of this GC attained at least 30X sequence coverage post-filtering! On a per-template-read, per-lane basis matching any barcode ( always less than one lower. Was compared to the type and number of reads whose start position is at the SNP locus in sequencing. Describing FP failing reads from an Illumina HiSeqX lane *, metrics produced by the CollectRnaSeqMetrics these! Unit area on the this lane expressed in units of [ cluster mm^2! Area on the 1000 most highly expressed transcripts are comparing two sets of.... Report GPA ( grade point average ) on a 4.0 scale duplicate marking was performed core '' the! ) ) 4.0 scale examples and the Retrospective Chart Retrieval program 6, 2023\u003c/strong\u003e 100 aligned bases were... A file with baited region by earning 499 marks out of 500 were marked as sample or duplicates!, calculated as max ( 1e-10, FWD_ERROR_RATE - REV_ERROR_RATE ) of mendelian found! After all filters have been applied convert marks to percentages with examples and the Retrospective Chart Retrieval.. Q20 or higher Harini were crowned the CBSE top 10 students by earning 499 marks out of bait.
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